Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAGECGKTPADKMALKLAPCASAGQDPKSVPSSGCCTAVHTIGKQ-------SPKCLCAVMLSDTAKSA-GIKPEVAMSIPKRCNLVDRPVGYKCGAYTLP
1SIY Chain:A ((2-78))
--------------TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKA-AAGAVRGINPNNAEALPGKCGVNIP------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24326 for 493 contacts (-49.3/contact) +
2D Compatibility (PS) -7270 + (NN) -5086 + (LL) 592
1D Compatibility (HY) -3600 + (ID) 950
Total energy: -40640.0 ( -82.43 by residue)
QMean score : 0.047
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: