Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGKCGKTPAEKVALKLAPCAKAAQDPGARPPAACCAAVRDIGTH----Q--SHACLCAVLLSSTVRRS-GVKPEVAITIPKRCKLANR-PVGYKCGAYTLPSLQG
1SIY Chain:A ((2-82))
-------TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKA-AAGAVRGINPNNAEALPGKCGVNIPYKIS-------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38442 for 533 contacts (-72.1/contact) +
2D Compatibility (PS) -7908 + (NN) -7241 + (LL) 632
1D Compatibility (HY) -3600 + (ID) 900
Total energy: -57459.0 ( -107.80 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: