Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DLRKGCYDLGITVLMGCPDSIDKKLPAPPTPSEGCCTLVRTIGM----------KCVCEIVNKKIEDT--IDMQKLVNVAAACGRPLA----PGSQCGSYRVPGA
1AFH Chain:A ((3-92))
----SCGQVASA-IAPCISYARGQGS---GPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV-----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43847 for 538 contacts (-81.5/contact) +
2D Compatibility (PS) -7959 + (NN) -6756 + (LL) 752
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -60510.0 ( -112.47 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: