Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNCGQVTSAMAPCVPYLMGRG-PLGGCCGGVKGLMGAAKTPADRKTACTCL--KSA-ANSMKGIDAGKAAGLPAACGVNIPYKISPSTDCSKVQ
1L6H Chain:A ((6-66))
-------GQLTVCTGAIAGGARPTAACCSSLRA-----------QQGCFCQFAKDPRYGR--YVNSPNARKAVSSCGIALP-------------
General information:
TITO was launched using:
RESULT:
Template:
1L6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30057 for 375 contacts (-80.2/contact) +
2D Compatibility (PS) -5700 + (NN) -894 + (LL) 1804
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -37847.0 ( -100.93 by residue)
QMean score : 0.147
(partial model without unconserved sides chains):
PDB file :
Tito_1L6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L6H-query.scw
PDB file :
Tito_Scwrl_1L6H.pdb
: