Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCGQVQSRMTPCLPYLTGSG-PLGRCCGGVKGLLGAAKTPADRKTVCTCL--KSA-AGSIGGINVRKAAGLPNMCGVNIPYQISPSADCTKVQ
1L6H Chain:A ((6-66))
-------GQLTVCTGAIAGGARPTAACCSSLRA-----------QQGCFCQFAKDPRYGR--YVNSPNARKAVSSCGIALP-------------
General information:
TITO was launched using:
RESULT:
Template:
1L6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21485 for 375 contacts (-57.3/contact) +
2D Compatibility (PS) -5862 + (NN) -2253 + (LL) 1960
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -29990.0 ( -79.97 by residue)
QMean score : 0.158
(partial model without unconserved sides chains):
PDB file :
Tito_1L6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L6H-query.scw
PDB file :
Tito_Scwrl_1L6H.pdb
: