Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------DPLPPCTVIVNQLNPCVPFLTRNVATPSQTCCGGVRYLANYSSSKGDRISICQCIEGSQSMFPLIDFSLIS-NLPASCSVPITLPKITPTFDCSTV
1JMX Chain:A ((282-363))
GKARLLAVQPAFIKAGG-ESEIT-----LVGSGLAGKPDLGAGVEVTEVLEQTP-------TLVRLKARAAADAKPGQREVAVGTLKGVNLAVYD----------
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27721 for 485 contacts (-57.2/contact) +
2D Compatibility (PS) -7842 + (NN) -4806 + (LL) 1088
1D Compatibility (HY) 400 + (ID) 200
Total energy: -39081.0 ( -80.58 by residue)
QMean score : 0.092
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: