Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVTQNVAPCFNYVKN---GG-------------AVPAACCNGVRNLNSQAKTTADRQQTCNCLKNAAGSIP--G-LN-------PSLAAGLPGKCGVSVPYKISTSTNCATVK
1SM7 Chain:A ((13-101))
-------QHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41528 for 414 contacts (-100.3/contact) +
2D Compatibility (PS) -6434 + (NN) -2347 + (LL) 1808
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -53401.0 ( -128.99 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: