Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DKCGNQIQGLLNKCSPILLGK-SPSAACCGLIRSADM----------GCVCPKVTPQIAKQINVSKVVSVVKSCGRNVP----HRTRCGSIVTP
1BWO Chain:A ((2-89))
-DCGHVDSLV-RPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCSR----
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26117 for 466 contacts (-56.0/contact) +
2D Compatibility (PS) -7228 + (NN) 451 + (LL) 408
1D Compatibility (HY) -1600 + (ID) 900
Total energy: -34986.0 ( -75.08 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: