Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QCGGSFVDIEAQCSQFVHKTGPKTPPSLGCCQVVKTLNV----------NCVCRFVTPQVEAM--ISMEKVVYVARTCGVTVR----AGTQCGKFKFLAMPIFQG
1AFH Chain:A ((3-92))
SCGQVASAI-APCISYARGQGS--GPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV----------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53776 for 538 contacts (-100.0/contact) +
2D Compatibility (PS) -7196 + (NN) 629 + (LL) 1320
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -62873.0 ( -116.86 by residue)
QMean score : 0.140
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: