Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSTICKMPVAGLMSCKPSVTPPNPTAPSADCCSALSHA--------DIN--CLCSYKNSNLLPSL-GIDPKLAMQLPGKCKLPHPANC
1SIY Chain:A ((2-78))
---TCGQVQGNLAQCIGFLQKG--GVVPPSCCTGVKNILNSSRTTADRRAVCSCL-KAA--AGAVRGINPNNAEALPGKCGVNIP---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28542 for 449 contacts (-63.6/contact) +
2D Compatibility (PS) -6962 + (NN) -6960 + (LL) 232
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -45182.0 ( -100.63 by residue)
QMean score : 0.334
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: