Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
INCDNDLIGLASKCQKYVVKQGSSAKPSPECCKVVKNVNV----------PCVCSHVTKQIED--LISMKKVFDVAKSCGKKVT----PGTKCGSYTVPN
1AFH Chain:A ((2-92))
ISCGQVASA-IAPCISYARGQGS--GPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV----
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21725 for 541 contacts (-40.2/contact) +
2D Compatibility (PS) -7543 + (NN) -1489 + (LL) 332
1D Compatibility (HY) -2000 + (ID) 950
Total energy: -33375.0 ( -61.69 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: