Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--VTC--SPAQLSSCVSAITSS--TPPTNLCCSKIKE-QKPCLCQYLKNPKLQKF-INTPNARKVASTCGTPFP-KC
2RKN Chain:A ((1-77))
AIDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELASALPKQCGLANAPTC
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25029 for 413 contacts (-60.6/contact) +
2D Compatibility (PS) -6841 + (NN) -2487 + (LL) 0
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -40157.0 ( -97.23 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: