Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QNCSAAIGGLMSCGPYVL----PGN-QLT-------PSTQCCSAIQAVNHGCLCETIN------I-----------------ISSLPGHCSLPPVSCGTA
2LVF Chain:A ((16-107))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRCPM-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35155 for 312 contacts (-112.7/contact) +
2D Compatibility (PS) -5667 + (NN) -3 + (LL) 704
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -44821.0 ( -143.66 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: