Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QECGNDLSNVQVCAAMVLPGSGRPNSECCAALQST--NRDCLCNALR---------------------AATSLPSLCNLP-PVDCGINT
3OB4 Chain:A ((429-491))
-------------------------ERCCNELNEFENNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAPQRCDLD-
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20420 for 206 contacts (-99.1/contact) +
2D Compatibility (PS) -4260 + (NN) -1656 + (LL) 864
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -30172.0 ( -146.47 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: