Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIRSAAASLSPCLGAAGNARAAVPPACCSKVTALIKT-------APKCLCAVLLSPLAKQA-GIKPGIAITIPKRCSIKNRQAGKKCGKYTLP
1SIY Chain:A ((2-78))
-------TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKA-AAGAVRGINPNNAEALPGKCGVNIP------------
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46677 for 493 contacts (-94.7/contact) +
2D Compatibility (PS) -7185 + (NN) -2027 + (LL) 720
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -60919.0 ( -123.57 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: