Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------ESNNCSKGANY---FFPCINYVG------------GFSPKPAKDCCSGLEELNKMAKEKEGPENICQCIEDMAYVTNVPFI----ASRVQSLPEDCHIHLSFPISISMNCSRV
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL--------DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNL-MSQPCQM-------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53201 for 509 contacts (-104.5/contact) +
2D Compatibility (PS) -7815 + (NN) 2117 + (LL) 1136
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -62963.0 ( -123.70 by residue)
QMean score : 0.246
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: