Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AMSPSQCKEEQRLLVSACRSILSGR-S-PSPSCCQRIRVTHV----------ECVCPVVTPKLAA--LIGVERTIKQIEGCGRVVP----HKFKCGSITTP
1AFH Chain:A ((3-92))
-----SCGQVASAI-APCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39472 for 509 contacts (-77.5/contact) +
2D Compatibility (PS) -7407 + (NN) 790 + (LL) 364
1D Compatibility (HY) -1200 + (ID) 850
Total energy: -47775.0 ( -93.86 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: