Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QINTPCSPSMLSTFTPCINFLRNSTANGTSPTADCCKSLQTLTS---G----GRDCLCLIVTGSVPFQI-PINRTLAISLPRACNMPGVPVQCKV
1BWO Chain:A ((3-78))
------CGHVDSLVRPCLSYVQGG----PGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIAR---GIHNLNEDNARSIPPKCGVNLP------
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37400 for 435 contacts (-86.0/contact) +
2D Compatibility (PS) -6960 + (NN) -2975 + (LL) 824
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -51711.0 ( -118.88 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: