Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----DSDQDKEECTQQLVALATCLPYVG---GDAKAPT---PDCCSGLKQVLNNNKKCLCVIIK-------DRNDPDLGLNINVTLAL--ALPSVCNAPANVSKCPG---------------
1HSS Chain:A ((5-124))
MCYPGQAFQVPA-------LPACRPLLRLQCNGSQVPEAVLRDCCQQLAHI---SEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPIVVDA-SGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33370 for 424 contacts (-78.7/contact) +
2D Compatibility (PS) -7823 + (NN) -4655 + (LL) 932
1D Compatibility (HY) -3600 + (ID) 800
Total energy: -49316.0 ( -116.31 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: