Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMVAAQCDA--GQLVVCAPAILGGAM-PTASCCSKLREQE---------QQGCFCEYLRNPAYAGY--INSQTARGAIAACNVTLPQCS
1AFH Chain:A ((2-80))
----ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31521 for 452 contacts (-69.7/contact) +
2D Compatibility (PS) -6798 + (NN) 195 + (LL) 1188
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -40786.0 ( -90.23 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: