Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DDDATLDCDSQVNGLAGNCMTAVLIGTK-PSSKCCKFVRSAQL----------DCLCPKITKDVTKMITERLLSTALKIAKQCNWELP----HNYQCGSYTFP
1AFH Chain:A ((3-92))
------SCGQVASA-IAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKN-AAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44517 for 546 contacts (-81.5/contact) +
2D Compatibility (PS) -7638 + (NN) -1416 + (LL) 212
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -55359.0 ( -101.39 by residue)
QMean score : 0.299
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: