Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YCFLADIQPCIPAIKATGPRQAPTAACCDSISKTSQ----------VCLCQAVSGPETPRA-GLSVGKALVLPLECGINVP----SGTTCAKFFLVVFDLVFA
1AFH Chain:A ((8-92))
---ASAIAPCISYARGQGS--GPSAGCCSGVRSLNNAARTTADRRAACNC-LK-NA-AAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV----------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35375 for 499 contacts (-70.9/contact) +
2D Compatibility (PS) -7044 + (NN) -2978 + (LL) 2088
1D Compatibility (HY) -2400 + (ID) 1050
Total energy: -46759.0 ( -93.71 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: