Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVDCTSQLAPVAPCLDYVQGNGKTPSSDCCKGLSSLVTT-------SPVCLCQLSEGKLNLSALGVTVDMKRALSLPTVCKIKGA----DRSRCAGKLSIP
1SIY Chain:A ((2-89))
--TCGQVQGNLAQCIGFLQKG-GVVPPSCCTGVKNILNSSRTTADRRAVCSC--LKAA--AGAVR-GINPNNAEALPGKCGVNIPYKISTSTNCNS-----
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32254 for 543 contacts (-59.4/contact) +
2D Compatibility (PS) -7912 + (NN) -1900 + (LL) 1024
1D Compatibility (HY) -5600 + (ID) 800
Total energy: -47442.0 ( -87.37 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: