Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DYCDLTTLLPCLSSVIGDKPTPPSEECCAVVRVVDP----------DCVCGHVGDDEGIT-GINVKLAAQIPKKCGRHVP----KGFKCGEH
1AFH Chain:A ((8-91))
----ASAIAPCISYARGQGS-GPSAGCCSGVRSLNNAARTTADRRAACNC-LKNA-AAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR-
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28105 for 488 contacts (-57.6/contact) +
2D Compatibility (PS) -7192 + (NN) -4139 + (LL) -156
1D Compatibility (HY) -800 + (ID) 1150
Total energy: -41542.0 ( -85.13 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: