Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ACSNNYIQLAGCLNAVSSSAGYPGSSCCTAVSHFKN----D----VNCLCSTLVAAKNAGV-IRNMPNALTVPKRCGFKNNIP--KNFRCAGYKVGS
1T12 Chain:A ((3-89))
TCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTC--LKSA-AGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSK-----
General information:
TITO was launched using:
RESULT:
Template:
1T12.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35523 for 514 contacts (-69.1/contact) +
2D Compatibility (PS) -7886 + (NN) -3507 + (LL) 156
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -52960.0 ( -103.04 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_1T12.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T12-query.scw
PDB file :
Tito_Scwrl_1T12.pdb
: