Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QCQGSIQDLKICVPYVQKKGPKIPPSQACCDAIKGVDI----------LCVCHHLPPDIGE--LISIEKVVFVLQVCREPLA----PGTKCGT
1AFH Chain:A ((3-91))
SCGQVASAIAPCISYARGQGS--GPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSR
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47777 for 519 contacts (-92.1/contact) +
2D Compatibility (PS) -7391 + (NN) -2148 + (LL) 356
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -58860.0 ( -113.41 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: