Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPTECKEERKVAGNACRPVLYWR-S-PSADCCQRVRVSHV----------ECVCPYVSTKTAAIIGGLGVPYVVKKIEGCGRTVP----RKFKCGSITTP
1AFH Chain:A ((3-92))
-----SCGQVASAI-APCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV---
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32855 for 532 contacts (-61.8/contact) +
2D Compatibility (PS) -7529 + (NN) -710 + (LL) -96
1D Compatibility (HY) -400 + (ID) 950
Total energy: -42540.0 ( -79.96 by residue)
QMean score : 0.165
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: