Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QGCRGDFRNLAAQCMPYVQKPGPKTPPSKGCCNAVRTVDV----------PCACQHLPPGVGGT--VSLEKVAFVLRVCGKPLK----PGTKCGSYTVPPAV
1AFH Chain:A ((3-92))
-SCGQVASAI-APCISYARGQGS--GPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36812 for 538 contacts (-68.4/contact) +
2D Compatibility (PS) -7676 + (NN) -4872 + (LL) 844
1D Compatibility (HY) -3600 + (ID) 1050
Total energy: -53166.0 ( -98.82 by residue)
QMean score : 0.196
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: