Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DQVCKGDFGSLVEQCLQYVQKPGPKTPPSEGCCNAINTVDI----------PCVCQHLPPVVGD--IVSLEKVAFVLRACGKPLE----PGTKCGNYTVPPAV
1AFH Chain:A ((3-92))
--SCGQVASA-IAPCISYARGQGS--GPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV------
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44577 for 530 contacts (-84.1/contact) +
2D Compatibility (PS) -7432 + (NN) -2596 + (LL) 800
1D Compatibility (HY) -2400 + (ID) 850
Total energy: -57055.0 ( -107.65 by residue)
QMean score : 0.297
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: