Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SQVNAPCTWTEISEEYDYCGDSLTRGVPWVSPLKVCCDTIKLNKM----------KCICQVVTKTFSQNFDFYKLSKLSHACGDLLV----PGSYCGGNYH
1BWO Chain:A ((3-88))
-------CGHVDSLV-RPCLSYVQGG-P--GPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYTISLNIDCS----
General information:
TITO was launched using:
RESULT:
Template:
1BWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3888 for 460 contacts (8.5/contact) +
2D Compatibility (PS) -7615 + (NN) -3863 + (LL) 780
1D Compatibility (HY) 2000 + (ID) 800
Total energy: -5610.0 ( -12.20 by residue)
QMean score : 0.097
(partial model without unconserved sides chains):
PDB file :
Tito_1BWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BWO-query.scw
PDB file :
Tito_Scwrl_1BWO.pdb
: