Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APIKVAGGVGNCEKDMQWCIDKTEFFTHGYIYERCCYNMI-MKKKCMCLFLKSPKLKIAARNVNNACGRGGLPKDAFSEFKC
1RMK Chain:A ((1-31))
----------ACSKKWEYCIVPILGFV------YCCPGLICGPFVCV-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1RMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5318 for 155 contacts (-34.3/contact) +
2D Compatibility (PS) -3251 + (NN) -981 + (LL) 2344
1D Compatibility (HY) -3600 + (ID) 450
Total energy: -11256.0 ( -72.62 by residue)
QMean score : -0.007
(partial model without unconserved sides chains):
PDB file :
Tito_1RMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RMK-query.scw
PDB file :
Tito_Scwrl_1RMK.pdb
: