Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADNLYLYKGSVKITEMTLNLNEAKIIVYEDSGGNKYTLDASGISTLTNIDDIKLSDLLEGKVKFIYQKKDSNAIQIKGLGNIISTLLATQKAVDGESILAEEVSKKPVVDTILKATDLVNLNKNIVETELEDKFVKKDASNLTDAVNQKAFAEKILPAKDGQKSILVEKLGGLLGEPGAVYGDSNPKITAKDFLAEKASLVKTDGSNIVTQTDKGKALVEAILNAKEPISNKEVKIVETELAKTFVKTA----------DLGTPAVAGKVLDAKDGQKSILVEKLGRFLDTTSTEYSNQTAKVFSGEKGTKPTAEEVVTKLLANNKKDLTDEVAQNPGLRAAVTSNSGLRGTVIDNLKGDTDFKTDITIQVDAKDPAFQGFVREIISQPSFEIPTSDDAPLSWDWI |
2VHX Chain:A ((33-130)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLIQAGAGEGSA---ITDADFKAAGAQLVGT--------ADQVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVKAPKLVSNSLVAHM |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VHX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 11329 for 533 contacts (21.3/contact) +
2D Compatibility (PS) -8891 + (NN) 1878 + (LL) 11852
1D Compatibility (HY) -3200 + (ID) 1500
Total energy: 11468.0 ( 21.52 by residue)
QMean score : 0.210
|
|
|