Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDRLKKIHWLLVTNVIALFCIGIVVQYSSAGGKWAPFAIHQLVIFSFFFLLAIAMS-FIELDFYL--------KHAYFFYIAAVISLLVVNFFGLYTMGATRWIRIG-PISLQ-PSEFAKVGLILALARYFNKQSVYKMMEFQRLLKALIFIF-LPVFLVLKQPNLGTAVIMLFIGASIIF-TAIIKRAHLIIYGII---SILVIPAIWPSLRSYHKQRILSFLDS-SVDPLGIGYNAQQSQI-AIGSGGLFGKSFVSGSQTQLGFLPEKHTDFA-FAVLSEEWGFLGSMTLIVLYTTLLAIIFSIAYRSKNYFSKLVSIGIFAFFGVHFFINIGMTIGLLPVIGDPLPFLSYGGSTTAASSICIGLLLSSVAS-MKDLKLKLSISSIERPVV |
4OVY Chain:A ((1-305)) | EEPLPSWNDSAARRAILEYVKSVTTEGSP---RFVPVSER-IVTFDNDGTLWCEQPMYVQLAFALDRVRLLADKHPEWRTEEPFRAVIEKDLPALAKLGAKGLTELTMATHAGMTDDEFENIVTEWIRKARHPK-------FHRPYTECVYQPMLELLAFLRQHEF---KTFIVSGAGIEFMRPWAKEVYGIPPEQVIGSSVKLKYELRDGKPVLVRLAELNFIDDQAGKPVGIRQVIGRRPVMAVGNS---------------------DGDYEMLEYVTS--GPANGLGLIVHHTDAVREF---AYDRQSPFGRL-----------------------------------DRALTDATSKGWIVI------DMQRDWKVIFPES------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OVY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -247125 for 2143 contacts (-115.3/contact) +
2D Compatibility (PS) -26771 + (NN) 15159 + (LL) 5796
1D Compatibility (HY) 23200 + (ID) 750
Total energy: -230491.0 ( -107.56 by residue)
QMean score : -0.006
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