Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQDSNASCNTGPFYKGVIKFLNQFQSRVNSEQSREDYVKESIIISLEDAISPFYSLVDKGVCYTIPNSERITLLDICVNQLVDNHRKIVHGVILLLSRLRRNRKSMLFNDKYFC
3VJ8 Chain:A ((250-281))
--------------------------------------------------------------------ENIDLAVQCLNELITNALHHIPDVITYLSRLR--------------
General information:
TITO was launched using:
RESULT:
Template:
3VJ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7210 for 119 contacts (-60.6/contact) +
2D Compatibility (PS) -3074 + (NN) -932 + (LL) 4612
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -10504.0 ( -88.27 by residue)
QMean score : 0.134
(partial model without unconserved sides chains):
PDB file :
Tito_3VJ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VJ8-query.scw
PDB file :
Tito_Scwrl_3VJ8.pdb
: