Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEVSNSFDEIKVFIEQKKEILKYIVSWLKEDKQENFLKEFEQIQIDFSEKAKRLTSLAMKKLKILTIADLNLAVISQNQYMKISYKSVISRNSVHIMLIKKNSDNSFAFYDPNLWCSF
4NFU Chain:A ((369-413))
-QYVQAALEEEKKRVENQKKIIQVI-------QQERFLKKLAWIEDEYKPKCQAHKNGYYDSFKVSNEENDFKANVKRAELAGVFDEVLGLLKKCQLPDEFEGDIDWIKLATRYRRLVE
General information:
TITO was launched using:
RESULT:
Template:
4NFU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6748 for 185 contacts (36.5/contact) +
2D Compatibility (PS) -4776 + (NN) -2865 + (LL) 796
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -4047.0 ( -21.88 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_4NFU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NFU-query.scw
PDB file :
Tito_Scwrl_4NFU.pdb
: