Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAERANDIRPGQVLEHNGGLFLVVSIMHTQPGKGGAYIQAEMKNIKTGAKLYERFRSDATIRRAILDEEEYIYLFTEGNIVNLMHPSNYEQITINLDLLEEKKIYLQDNMRIKVVTYQDKIIFAHVPDYVRLTVKETESFIKGQTITSSYKPAVLENGMRINVPQFIKEEDKIVVYTPDDSYYERVKE
1YBY Chain:A ((31-215))
-MISAGDFKNGVTFELDGQIFQVIEFQHVKPG--AAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDT-------TATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYMERV--
General information:
TITO was launched using:
RESULT:
Template:
1YBY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87564 for 1204 contacts (-72.7/contact) +
2D Compatibility (PS) -19160 + (NN) -6704 + (LL) 692
1D Compatibility (HY) -12400 + (ID) 2600
Total energy: -127736.0 ( -106.09 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1YBY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBY-query.scw
PDB file :
Tito_Scwrl_1YBY.pdb
: