Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSFCVKAPAKINLFLHVVEKKETGYHLIEGLFVFANLSNFLEIKVGEKDFRYDNPIVEFVNSELKISNKYNTVMRAVNLLLRHAPVRTKVTVKVVKNIPTSAGLGSGSSDAGAVIRTLGKLWKIDRPI----LNEIALSVGADVPASIDSKPVLVRGIGEELCYINKFSLPTNIVLAKPKKKFLSTPEVFSKYG-GNFSKPIEWRDDTEKDLLKLLKETENDLQEIAISLVPEIRDVILALESQEGSILSRMSGSGVTCFGIFDSEENAKTAAVNIREKQPEWWVCDAQLIV |
2VF3 Chain:A ((7-271)) | -----VLSPAKINLGLWVLGRLPSGYHEI--LTLYQEIPFYDEIYIREGVLR--------VETNIGIPQEENLVYKGLREFERITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNEL--LGSPLSEEELRELVGSISADAPFFLLGKSAIGRGKGEVLEPVET-EISGKITLVIPQVSS-STGRVYSSLREEHFVTPEYAEEKIQRIISGEVEEIENVLGDIARELYPEINEVYRFVEYL--GFKPFVSGSGSTVYFFGGASEELKKAA-----KMRGWKVVELEL-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VF3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -132995 for 2200 contacts (-60.5/contact) +
2D Compatibility (PS) -27943 + (NN) -5546 + (LL) 2168
1D Compatibility (HY) -16400 + (ID) 4150
Total energy: -184866.0 ( -84.03 by residue)
QMean score : 0.413
|
|
|