Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFDVTILTIFPEMFPGFLNYSLAGKALEKKIWNLQVINIRFFAKDRHLTVDHIPYGGGAGMIMRPDVVGDAVDSVLSTHKDTK-FIYMTPSGTKFDQSIARELVGFPHITILCGRFEGIDQRVIDEYTPYELSIGDYILSGGEPAAMVILDVCVRLLPGVVNNSGSITEESFSYSGGVLEYPQYTRPKQWRKHRVPKILLSGNHKKISDWRQKQSQVITKRRRPELLDGEINDKFT
1UAK Chain:A ((23-246))
---IGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVL---------SF--ADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLALTDEQ
General information:
TITO was launched using:
RESULT:
Template:
1UAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -189061 for 1522 contacts (-124.2/contact) +
2D Compatibility (PS) -22880 + (NN) -8467 + (LL) 404
1D Compatibility (HY) -18800 + (ID) 4450
Total energy: -243254.0 ( -159.83 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_1UAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UAK-query.scw
PDB file :
Tito_Scwrl_1UAK.pdb
: