Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFEWNTNNIIDATGGRGKSGCHNLNISTDTRNIKKGDLFIALKGKNFDGHDFLHEAFLKGAAAAVVSEDKYRNLPVIVVQDTLKALHDMASYYIRNVLVNAEVIAITGSVGKTTTKDMLHTVLSQYGVSHVNDGNLNNNIGLPLTILKAPENCRYLILEMGMNKAGEIKELSKISNPNIAVITNIEPVHVENFSSLFDIAQAK-LEILYGVKNNGTLILNKDNKYYDYLLSHVDRDVVSFGRSESATVCLLNVIKNDKGLNLKIRLNNNQIMNCNLCVQGKHFVYSVLAVVAVIQNLGLNLSKLPLALENFNITKGRGSVHKAKY---NGKCIHLIDDSYNASPA----SMKAAIRTLG-----------IYSNRRKVALLGDMLELGNKSITFHMKLLDSIVKYDV---DKVYTVGKFMLKLHRLLP--GNIKGTHFNDSNQLKSNLANIVQNNDVVLVKGSRGVKMDFIVQGFIIEY |
1P31 Chain:A ((167-462)) | --------------------------------------------------------------------------------------------------------------------------------------------------------SRYLIAEADESDASFLH-----LQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQ-GAGRRFDQLGEFIRPNGK-VRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRTRD--LFDDFVQV--------LSQVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESWK- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1P31.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -127122 for 1957 contacts (-65.0/contact) +
2D Compatibility (PS) -29489 + (NN) -11643 + (LL) 9956
1D Compatibility (HY) -15200 + (ID) 3900
Total energy: -177398.0 ( -90.65 by residue)
QMean score : 0.463
|
|
|