Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTFLMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILYSMLFGVSTTLKAIPYSAIKFTSMLGI-FIYGGTGIATVLLGQNFLSYDILLANNVAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK
2G1N Chain:A ((83-146))
-----------------------------------GFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIF-DNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHY
General information:
TITO was launched using:
RESULT:
Template:
2G1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45427 for 319 contacts (-142.4/contact) +
2D Compatibility (PS) -6500 + (NN) -891 + (LL) 2548
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -56070.0 ( -175.77 by residue)
QMean score : -0.214
(partial model without unconserved sides chains):
PDB file :
Tito_2G1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2G1N-query.scw
PDB file :
Tito_Scwrl_2G1N.pdb
: