Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEIDYHKITIVMTNGQEFETRSTYGKEGDKIKLDRDPLTHPAWTGSLTSGSTNKTSKIAKFNDKYGNIF
1COY Chain:A ((219-254))
------------------------YGNNAGKKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVT
General information:
TITO was launched using:
RESULT:
Template:
1COY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2117 for 120 contacts (17.6/contact) +
2D Compatibility (PS) -3734 + (NN) -923 + (LL) 2080
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -2310.0 ( -19.25 by residue)
QMean score : 0.279
(partial model without unconserved sides chains):
PDB file :
Tito_1COY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1COY-query.scw
PDB file :
Tito_Scwrl_1COY.pdb
: