Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MRSFFVFLIFFSVSALA----SVSDVQLKEKYRDWLVYTALEDGEKVCYIVSYPKKKSEHYTTNRKPYVMVSYVDKKADEVSVTSGFQYDKEPIVLNIDKKIKYALYIIQGDLAWTEHTKTDRDLILKMKQGLSMVVSGRIKATTIDDTYSLLGFQKAYQKMHDLCYVK
2HRV Chain:A ((1-139))
GPSDMYVHVGNLIYRNLHLFNSEMHESILVSYSSDLIIYRTNTVGDD--YIPSCDCTQATYYCKHKNRYFPITVTSHDWYEIQESEYYP-----------KHIQYNLLIGEG-----PCEPGDCGGKLLCKHGVIGIVTAGG-----DNHVAFIDLRHFHCA--------
General information:
TITO was launched using:
RESULT:
Template:
2HRV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48875 for 1025 contacts (-47.7/contact) +
2D Compatibility (PS) -14239 + (NN) 880 + (LL) 2636
1D Compatibility (HY) -8000 + (ID) 1200
Total energy: -68798.0 ( -67.12 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_2HRV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HRV-query.scw
PDB file :
Tito_Scwrl_2HRV.pdb
: