Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVFGLHHFNYTLKKNKNDVAKALFEYGAKIDVDYVEERLIISGTTEYSQSTVEILLPYASI
3MJ2 Chain:A ((20-52))
--FGLVHLGYWL--NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAP
General information:
TITO was launched using:
RESULT:
Template:
3MJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -693 for 136 contacts (-5.1/contact) +
2D Compatibility (PS) -3226 + (NN) 2903 + (LL) 528
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -3238.0 ( -23.81 by residue)
QMean score : -0.003
(partial model without unconserved sides chains):
PDB file :
Tito_3MJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MJ2-query.scw
PDB file :
Tito_Scwrl_3MJ2.pdb
: