Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTINWQAKDPEGNSINCSMTVKVGSGGIQSATGGFGVSKFKSPLPEGKKSEILKLVEQNKEVFISGKTLYKAFTDVGQSVDD
4YWC Chain:C ((1-22))
------------------------------------------SVPQARKASLARFLEKRKERLM------------------
General information:
TITO was launched using:
RESULT:
Template:
4YWC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6303 for 80 contacts (78.8/contact) +
2D Compatibility (PS) -2343 + (NN) -547 + (LL) 1948
1D Compatibility (HY) -1600 + (ID) 250
Total energy: 3511.0 ( 43.89 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_4YWC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YWC-query.scw
PDB file :
Tito_Scwrl_4YWC.pdb
: