Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYILASLSLPFFITENYLLITALVPLLSAVVILFTGKWPTVSNGITVASSVLLFVYTCLCTLYWAYGDHSQFILINFGNNLHVSLKLESTGVVFSLLISFLWILTSIYTIYYMQNNYPDSNYSDFLCFLLVSISCTMFIAFSGDLLTTFVFYELLTISTYPLVTYN-ATNESTIAGRYYFGVLFFSSLVLFFPVLGLLYNEFHTLDFVSSGIFEFDTSLVTFTAVCFTMLIYGL-GKAALMPMHFWLPRAM-VAPTPVSALLHAVAVVKSGAFII-VKVILYTFGIDNLQRFAQQNWFAGGWLPYAAGFTIIAASLIALKQKELKRLLAYSTVSQLSYIILFASIFS--DLSARVAIFQLVCHAFAKITLFFIAGSIIT---KTGEKYIDRIHGIGRSMPVTMVAFAIGALSMIGVPPASTFWGKFLIFQAVFNSGNIALSVFVTLVLTVGTVLNAMYFLPIIYNAFFSKSSKNFFIKKIPVF---LILPPVITAICTFIIFLVTPFILPLC |
| 3RKO Chain:N ((63-477)) | ---------------------------------------------------------------------------------VTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDN--KDEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTILSAAA-SSFLLFGMALVYAQSGDLSFVALGK------NEPLLLAGFGLMIVGLGFKLSLVPFHLWTPDVYQGAPAPVSTFL-AT-ASKIAIFGVVMRLFLYAPVGD--------SEAIRVVLAIIAFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIGKFYVLAVGVQAHLW----WLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQ-----PSNWQYSAGGIVVLISALLVLVLGVWPQPLISIV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -509389 for 3555 contacts (-143.3/contact) +
2D Compatibility (PS) -39094 + (NN) -5408 + (LL) 8816
1D Compatibility (HY) -30400 + (ID) 4000
Total energy: -579475.0 ( -163.00 by residue)
QMean score : 0.355
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