Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLRKNLITSESVAAGHPDKVADQISDAVLDEYLLTDPFSRTAIETLVTKDNVIIAGEVFGPNVANSTIENVVRNTIKDIGYEHD--GFHWGEVGVNMLLHEQSNDIAIGVDQGAGDQGIMYGYATIETKSLMPAPIFYAHSILKNVMSVVKEAKL---GPDAKSQITLAYESN----LPVRAESIIVSIQHPED--LDQLK--VKEIIYPYVVSSLPKGWMCAEENFFVNPTGRFVIGGPVSDCGLTGRKIMVDTYGGYIPHGGGAFSGKDATKVDRSAAYMARYLAKNIVFANLAERCLVQLSYAIGVSKPTSFYIDTFGTNKVDEERIKKLIESNIDLSTRGIIKHLSLSRPIYKRTACYGHFGKESEEDDGFSWENLNLSLDLSREFSVQSNRKVSLDC |
| 4KTV Chain:A ((20-389)) | ------LFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEI--TSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSP------------QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVV---PAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDS-----FPWEVPKKLKY----------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KTV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189439 for 2965 contacts (-63.9/contact) +
2D Compatibility (PS) -35843 + (NN) -13607 + (LL) 1592
1D Compatibility (HY) -31600 + (ID) 8250
Total energy: -277147.0 ( -93.47 by residue)
QMean score : 0.520
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