Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIATWNVNSIRK-RVDQLCSFIVDDQIDIILLQEIKCTEEQFPYVEIEKLGYECIVYGEVAR--NGVCVLSKHPILEKFKIDIVEGYQEARY-IECLIK-HNNQKMRVVSIYVPNGQSLGSHVFEYKLKFLDNLYERMDNLLKNEELIVIAGDYNVAPDEIDVFDPTLLNGQVCFHIKEREKLKAILNLGFKDAFRMSHPNLQQFSWWRYQGNSLRNNQGMRIDHMLLSPQAVDKLGICYIDDRLRKLENPSDHTPIVSIMEW
3G1K Chain:A ((3-251))
VLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVP-----PSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGK-MSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMG----SDHCPIGLEIEL
General information:
TITO was launched using:
RESULT:
Template:
3G1K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122031 for 1922 contacts (-63.5/contact) +
2D Compatibility (PS) -26106 + (NN) -12953 + (LL) 712
1D Compatibility (HY) -14400 + (ID) 3600
Total energy: -178378.0 ( -92.81 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3G1K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G1K-query.scw
PDB file :
Tito_Scwrl_3G1K.pdb
: