Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLP----KHLAIIMDGNSRWANSQGRVKIDGYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDLFYSILTDRDKVNFFHNYNIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRK------NIDCVSEDEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
4H2J Chain:A ((13-240))
------LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSE-----------LMELFVWALDS--EVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE-----
General information:
TITO was launched using:
RESULT:
Template:
4H2J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135041 for 1607 contacts (-84.0/contact) +
2D Compatibility (PS) -21942 + (NN) -2973 + (LL) 1280
1D Compatibility (HY) -14800 + (ID) 4450
Total energy: -177926.0 ( -110.72 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4H2J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H2J-query.scw
PDB file :
Tito_Scwrl_4H2J.pdb
: