Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDNLSLFIDYINDNIIYGSEIKREKLENLFNQFA-IKNVEKNIVYDELKSLDI---TIIESQDSYKNKLKRLFSVLLQSKKI
3T9M Chain:A ((151-206))
-----GIFVYFPDEQVLYGNDILKEKLGNL--SFADVKAYPQTL--ERLKAMKLPIKTVIGGHDS------------------
General information:
TITO was launched using:
RESULT:
Template:
3T9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17607 for 274 contacts (-64.3/contact) +
2D Compatibility (PS) -5226 + (NN) 1472 + (LL) 2264
1D Compatibility (HY) -7200 + (ID) 900
Total energy: -27197.0 ( -99.26 by residue)
QMean score : 0.211
(partial model without unconserved sides chains):
PDB file :
Tito_3T9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T9M-query.scw
PDB file :
Tito_Scwrl_3T9M.pdb
: