Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQSIPALPVGDIKKSIGFYCDKLGFTLVHHEDGFAVLMCNEVRIHLWEASDEGWRSRSNDSPVCTGAESFIAGTAS-CRIEVEGIDELYQHIKPLG--ILHPNTSLKDQWWDERDFAVIDPDNNLISFFQQIKS
3HUH Chain:A ((28-143))
------VLTVSDISTTIRFYEEVLGFSAVTFKQNRKALIFGAQKINLHQQEMEFEPKASRPTP----------GSADLCFITSTPINDVVSEILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQY---
General information:
TITO was launched using:
RESULT:
Template:
3HUH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39475 for 748 contacts (-52.8/contact) +
2D Compatibility (PS) -12271 + (NN) -3792 + (LL) 1608
1D Compatibility (HY) -5200 + (ID) 1600
Total energy: -60730.0 ( -81.19 by residue)
QMean score : 0.239
(partial model without unconserved sides chains):
PDB file :
Tito_3HUH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HUH-query.scw
PDB file :
Tito_Scwrl_3HUH.pdb
: